Stem-loop rno-mir-455

Accession

MI0006148

Description

Rattus norvegicus rno-mir-455 precursor miRNA

Gene family

MIPF0000129; mir-455

Literature search

13 open access papers mention rno-mir-455
(53 sentences)

Sequence

38302 reads, 87 reads per million, 477 experiments

ggugugagcgUAUGUGCCUUUGGACUACAUCGuggacgcagcaccauGCAGUCCACGGGCAUAUACACUugccucaag
((.(((((.((((((((((.((((((.(((.(((.......))).))).)))))).)))))))))).))))).))...

Structure

---  u     c          U      A   C   ga 
   gg gugag gUAUGUGCCU UGGACU CAU Gug  c
   || ||||| |||||||||| |||||| ||| |||  g
   cu cguUC CAUAUACGGG ACCUGA Gua cac  c
gaa  c     A          C      C   c   ga 

Annotation confidence High

Genome context

chr5: 79097208-79097285 [+]

Mature rno-miR-455-5p

• Accession: MIMAT0005316
• Description: Rattus norvegicus rno-miR-455-5p mature miRNA
• Sequence: 11 - UAUGUGCCUUUGGACUACAUCG - 32
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-455-3p

• Accession: MIMAT0017308
• Description: Rattus norvegicus rno-miR-455-3p mature miRNA
• Sequence: 48 - GCAGUCCACGGGCAUAUACACU - 69
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249