Stem-loop rno-mir-500

Accession

MI0006153

Description

Rattus norvegicus rno-mir-500 precursor miRNA

Literature search

10 open access papers mention rno-mir-500
(51 sentences)

Sequence

9873 reads, 24 reads per million, 474 experiments

cccccucucuAAUCCUUGCUAUCUGGGUGCUUAGugcuaucucaaugcAAUGCACCUGGGCAAGGGUUCAgagaagguga
..((.((((((((((((((...((((((((....(((.........)))..))))))))))))))))).))))).))...

Structure

-cc  c     -         UAU        UUAG   uau 
   cc ucucu AAUCCUUGC   CUGGGUGC    ugc   c
   || ||||| |||||||||   ||||||||    |||   u
   gg agagA UUGGGAACG   GGUCCACG    Acg   c
agu  a     C         ---        --UA   uaa 

Annotation confidence High

Genome context

chrX: 16121332-16121411 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-500

Mature rno-miR-500-5p

• Accession: MIMAT0017311
• Description: Rattus norvegicus rno-miR-500-5p mature miRNA
• Sequence: 11 - AAUCCUUGCUAUCUGGGUGCUUAG - 34
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-500-3p

• Accession: MIMAT0005321
• Description: Rattus norvegicus rno-miR-500-3p mature miRNA
• Sequence: 49 - AAUGCACCUGGGCAAGGGUUCA - 70
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249