miRBase entry: rno-mir-532

Stem-loop rno-mir-532


Accession
MI0006154
Description
Rattus norvegicus rno-mir-532 precursor miRNA
Gene family
MIPF0000113; mir-188

Literature search
8 open access papers mention rno-mir-532
(12 sentences)

Sequence

138990 reads, 153 reads per million, 491 experiments
uuuucucuucCAUGCCUUGAGUGUAGGACUGUugacaucuuaauuacCCUCCCACACCCAAGGCUUGCAggagagcaag
..(((((((.((.((((((.((((.(((..(((((....))))).....))).)))).)))))).)).)))))))....

Structure
--uu       c  U      A    A   ---CU     c 
    uucucuu CA GCCUUG GUGU GGA     GUuga a
    ||||||| || |||||| |||| |||     |||||  
    gagaggA GU CGGAAC CACA CCU     uaauu u
gaac       C  U      C    C   CCcau     c 


Annotation confidence High
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Genome context
chrX: 16109870-16109948 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from rno-mir-532
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-532-5p

Accession MIMAT0005322
Description Rattus norvegicus rno-miR-532-5p mature miRNA
Sequence 11 - CAUGCCUUGAGUGUAGGACUGU - 32
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-532-3p

Accession MIMAT0005323
Description Rattus norvegicus rno-miR-532-3p mature miRNA
Sequence 48 - CCUCCCACACCCAAGGCUUGCA - 69
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249