Stem-loop sequence rno-mir-674

Accession

MI0006159 (change log)

Description

Rattus norvegicus miR-674 stem-loop

Gene family

MIPF0000394; mir-674

Literature search

9 open access papers mention rno-mir-674
(25 sentences)

Stem-loop

   --           ca             g     ag  u 
5'   ccugagccuug  cugagaugggagu gugua  gc c
     |||||||||||  ||||||||||||| |||||  ||  
3'   gggcucggaac  gacucuacccucg cacgu  ug a
   gu           aa             a     -a  g 

Deep sequencing

47548 reads, 10 reads per million, 488 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr3: 108864462-108864538 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir674
• miRBase Tracker:MI0006159

Mature sequence rno-miR-674-5p

• Accession: MIMAT0005329
• Sequence: 11 - gcacugagaugggaguggugua - 32
• Deep sequencing: 11418 reads, 455 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-674-5p
  • miRDB:rno-miR-674-5p
  • microrna.org:rno-miR-674-5p

Mature sequence rno-miR-674-3p

• Accession: MIMAT0005330
• Sequence: 46 - cacagcucccaucucagaacaa - 67
• Deep sequencing: 36128 reads, 486 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-674-3p
  • miRDB:rno-miR-674-3p
  • microrna.org:rno-miR-674-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).