Stem-loop rno-mir-674

Accession

MI0006159

Description

Rattus norvegicus rno-mir-674 precursor miRNA

Literature search

9 open access papers mention rno-mir-674
(25 sentences)

Sequence

38271 reads, 1012 reads per million, 487 experiments

ccugagccuuGCACUGAGAUGGGAGUGGUGUAaggcucagguaugCACAGCUCCCAUCUCAGAACAAggcucgggug
(((((((((((..(((((((((((((.(((((..((....)).))))).)))))))))))))..)))))))))))..

Structure

--           CA             G     ag  u 
  ccugagccuuG  CUGAGAUGGGAGU GUGUA  gc c
  |||||||||||  ||||||||||||| |||||  ||  
  gggcucggAAC  GACUCUACCCUCG CACgu  ug a
gu           AA             A     -a  g 

Annotation confidence High

Genome context

chr3: 108864462-108864538 [+]

Mature rno-miR-674-5p

• Accession: MIMAT0005329
• Description: Rattus norvegicus rno-miR-674-5p mature miRNA
• Sequence: 11 - GCACUGAGAUGGGAGUGGUGUA - 32
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-674-3p

• Accession: MIMAT0005330
• Description: Rattus norvegicus rno-miR-674-3p mature miRNA
• Sequence: 46 - CACAGCUCCCAUCUCAGAACAA - 67
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249