miRBase entry: rno-mir-743a

Stem-loop rno-mir-743a


Accession
MI0006162
Description
Rattus norvegicus rno-mir-743a precursor miRNA
Gene family
MIPF0000386; mir-743

Literature search
2 open access papers mention rno-mir-743a
(9 sentences)

Sequence

4945 reads, 563 reads per million, 75 experiments
ugcagugcugUAUUCAGAUUGGUGCCUGUCAUguuuauaagaauGAAAGACGCCAAACUGGGUAGAguggagcuca
.((..((((.(((((((.((((((.((.((((..........)))).)).)))))).))))))).))))..))...

Structure
--u  ag    g       A      C  G    guuu 
   gc  ugcu UAUUCAG UUGGUG CU UCAU    a
   ||  |||| ||||||| |||||| || ||||     
   cg  gugA AUGGGUC AACCGC GA AGua    u
acu  ag    G       A      A  A    agaa 


Annotation confidence High
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Genome context
chrX: 151252828-151252903 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-743a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-743a-5p

Accession MIMAT0017315
Description Rattus norvegicus rno-miR-743a-5p mature miRNA
Sequence 11 - UAUUCAGAUUGGUGCCUGUCAU - 32
Evidence experimental
SOLiD [2]

Mature rno-miR-743a-3p

Accession MIMAT0005334
Description Rattus norvegicus rno-miR-743a-3p mature miRNA
Sequence 45 - GAAAGACGCCAAACUGGGUAGA - 66
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249