miRBase entry: rno-mir-760

Stem-loop rno-mir-760


Accession
MI0006164
Description
Rattus norvegicus rno-mir-760 precursor miRNA
Gene family
MIPF0000395; mir-760

Literature search
6 open access papers mention rno-mir-760
(32 sentences)

Sequence

2532 reads, 28 reads per million, 203 experiments
ggcgcgucgccCCCCUCAGGCCACCAGAGCCCGgauaccucagaaauuCGGCUCUGGGUCUGUGGGGAgcgaaaugcaac
.(((..((((.((((.((((((..(((((((.((((.........))))))))))))))))).)))).))))..)))...

Structure
--g   cg    c    U      AC       C    acc 
   gcg  ucgc CCCC CAGGCC  CAGAGCC Ggau   u
   |||  |||| |||| ||||||  ||||||| ||||   c
   cgu  agcg GGGG GUCUGG  GUCUCGG Cuua   a
caa   aa    A    U      --       -    aag 


Annotation confidence High
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Genome context
chr2: 225873354-225873433 [-]

Database links

Mature rno-miR-760-5p

Accession MIMAT0005336
Description Rattus norvegicus rno-miR-760-5p mature miRNA
Sequence 12 - CCCCUCAGGCCACCAGAGCCCG - 33
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-760-3p

Accession MIMAT0005337
Description Rattus norvegicus rno-miR-760-3p mature miRNA
Sequence 49 - CGGCUCUGGGUCUGUGGGGA - 68
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249