Stem-loop sequence rno-mir-760

Accession

MI0006164 (change log)

Description

Rattus norvegicus miR-760 stem-loop

Gene family

MIPF0000395; mir-760

Literature search

6 open access papers mention rno-mir-760
(32 sentences)

Stem-loop

   --g   cg    c    u      ac       c    acc 
5'    gcg  ucgc cccc caggcc  cagagcc ggau   u
      |||  |||| |||| ||||||  ||||||| ||||   c
3'    cgu  agcg gggg gucugg  gucucgg cuua   a
   caa   aa    a    u      --       -    aag 

Deep sequencing

7487 reads, 0.588 reads per million, 340 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr2: 225873354-225873433 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir760
• miRBase Tracker:MI0006164

Mature sequence rno-miR-760-5p

• Accession: MIMAT0005336
• Sequence: 12 - ccccucaggccaccagagcccg - 33
• Deep sequencing: 267 reads, 100 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-760-5p
  • miRDB:rno-miR-760-5p
  • microrna.org:rno-miR-760-5p

Mature sequence rno-miR-760-3p

• Accession: MIMAT0005337
• Sequence: 49 - cggcucugggucugugggga - 68
• Deep sequencing: 6723 reads, 297 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-760-3p
  • miRDB:rno-miR-760-3p
  • microrna.org:rno-miR-760-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).