Stem-loop rno-mir-873

Accession

MI0006166

Description

Rattus norvegicus rno-mir-873 precursor miRNA

Gene family

MIPF0000390; mir-873

Literature search

5 open access papers mention rno-mir-873
(9 sentences)

Sequence

37231 reads, 133 reads per million, 213 experiments

gugugcauuuGCAGGAACUUGUGAGUCUCCUauugaaaauggacagGAGACUGACAAGUUCCCGGGAacacccacaa
(((.(..(((.(.(((((((((.((((((((.((.......)).)))))))).))))))))).).)))..).)))..

Structure

--   u ca   G A         G        a  ga 
  gug g  uuu C GGAACUUGU AGUCUCCU uu  a
  ||| |  ||| | ||||||||| |||||||| ||  a
  cac c  aAG G CCUUGAACA UCAGAGga ag  a
aa   c ac   G C         G        c  gu 

Annotation confidence High

Genome context

chr5: 52481076-52481152 [-]

Mature rno-miR-873-5p

• Accession: MIMAT0005339
• Description: Rattus norvegicus rno-miR-873-5p mature miRNA
• Sequence: 11 - GCAGGAACUUGUGAGUCUCCU - 31
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-873-3p

• Accession: MIMAT0017318
• Description: Rattus norvegicus rno-miR-873-3p mature miRNA
• Sequence: 47 - GAGACUGACAAGUUCCCGGGA - 67
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249