Stem-loop sequence tae-MIR160

Accession

MI0006172 (change log)

Description

Triticum aestivum miR160 stem-loop

Gene family

MIPF0000032; MIR160

Literature search

18 open access papers mention tae-MIR160
(75 sentences)

Stem-loop

   -----------------     u  aaaca    ga     c       c         cu    -   cu      ucccca 
5'                  agagg ga     augg  uaugc uggcucc uguaugcca  cgcg uag  gccaac      a
                    ||||| ||     ||||  ||||| ||||||| |||||||||  |||| |||  ||||||       
3'                  ucucu cu     ugcc  guacg accgagg gcgugcggu  gcgc auc  cgguug      a
   cucucucucucucucuc     -  cucuc    -a     a       a         ag    c   -u      cguucc 

Deep sequencing

69163 reads, 271 reads per million, 116 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: 5B: 233412448-233412594 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0006172

Mature sequence tae-miR160

• Accession: MIMAT0005345
• Sequence: 22 - ugccuggcucccuguaugcca - 42
• Deep sequencing: 66799 reads, 116 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).