miRBase entry: tae-MIR399

Stem-loop tae-MIR399


Accession
MI0006176
Description
Triticum aestivum tae-MIR399 precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
22 open access papers mention tae-MIR399
(73 sentences)

Sequence

24188 reads, 140 reads per million, 116 experiments
ucgugugugaaucacagggcgcuucucccuuggcacgguggcaugcauguacauaugauggugguagccuggugagcgugcggugcagcuugcuagcaagccgugcgUGCCAAAGGAGAAUUGCCC
...((((.....))))(((((.((((((.((((((((.((((.(((.............(((....)))((((((((.(((...)))))))))))))).))))..)))))))).)))))).)))))

Structure
ucgugugugaaucaca     c      c        -g    a   auguacauaugauggugguagcc        g   g 
                gggcg uucucc uuggcacg  uggc ugc                       uggugagc ugc  
                ||||| |||||| ||||||||  |||| |||                       |||||||| ||| g
                CCCGU AAGAGG AACCGUgc  gccg acg                       aucguucg acg  
----------------     U      A        gu    a   -----------------------        -   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
1A: 229092696-229092821 [-]

Database links

Mature tae-miR399

Accession MIMAT0005349
Description Triticum aestivum tae-miR399 mature miRNA
Sequence 108 - UGCCAAAGGAGAAUUGCCC - 126
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17543110
    Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
    Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
    Genome Biol (2007) 8:R96