miRBase entry: tae-MIR1122a

Stem-loop tae-MIR1122a


Accession
MI0006184
Description
Triticum aestivum tae-MIR1122a precursor miRNA
Gene family
MIPF0000382; MIR1122

Literature search
7 open access papers mention tae-MIR1122a
(37 sentences)

Sequence

34937 reads, 410 reads per million, 116 experiments
auaaguacucccucuguuccuaaauacucccuccgucccaaaaauuuuggcuuagauuugucuaaauacguauguaucaagucauguuuuaguauUAGAUACAUCCGUAUCUAGAcuaaucuaagacaagaauuuugggacggagggaguauaagucuuuuuagagauuccacuacaaacuacauacggauguauauagacauauuuuagaguguagauucacucauuuuacuucguauguaguccauaguggaaucucuaagaaggcauauauuuaggaacagaggguguacca
....((((.((((((((((((((((((((((((((((((((((.(((((.((((((((...(((((.((((((.......)).))))))))).........................)))))))).))))).))))))))))))))))))))..(((((((((((((((((((((...((((((((((((.(((...............(((((......)))))....)))))))))))))))...)))))))))))))))))))))......)))))))))))))).))))..

Structure
auaa    u              --------------------------------------------------------------------------------------------------------------------------                    a     g        ----------------------ugu     u    -  gu 
    guac cccucuguuccuaa                                                                                                                          auacucccuccgucccaaaa uuuug cuuagauu                         cuaaa acgu au  a
    |||| ||||||||||||||                                                                                                                          |||||||||||||||||||| ||||| ||||||||                         ||||| |||| ||  u
    caug gggagacaaggauu                                                                                                                          uaugagggaggcaggguuuu agaac gaaucuaa                         gauuu ugua ug  c
--ac    u              uauauacggaagaaucucuaaggugauaccugauguaugcuucauuuuacucacuuagaugugagauuuuauacagauauauguaggcauacaucaaacaucaccuuagagauuuuucugaa                    a     a        ucAGAUCUAUGCCUACAUAGAUuau     -    c  aa 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Yao et al. misname this sequence miR506 in [1]. miR1122 is unrelated to mammalian miR-506;

Genome context
4B: 268039586-268039880 [-]

Database links

Mature tae-miR1122a

Accession MIMAT0005357
Description Triticum aestivum tae-miR1122a mature miRNA
Sequence 96 - UAGAUACAUCCGUAUCUAGA - 115
Evidence experimental
cloned [1], RTPCR [1]

References

  1. PubMed ID: 17543110
    Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
    Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
    Genome Biol (2007) 8:R96