miRBase entry: tae-MIR1133

Stem-loop tae-MIR1133


Accession
MI0006195
Description
Triticum aestivum tae-MIR1133 precursor miRNA
Gene family
MIPF0000382; MIR1122

Literature search
5 open access papers mention tae-MIR1133
(7 sentences)

Sequence

4122 reads, 94 reads per million, 116 experiments
acuucuuagugauaguggucaauuacauCAUAUACUCCCUCCGUCCGAAAaaguuugucccaagcuuguuccucaaauggauguaucuagcacuaacuugaugcuacauacauucauuugagggacacgcuuuuucggauggagggaguaguaauuuugauauacacacugaaguugcua
(((((..((((...((((((((((((......((((((((((((((((((((((.((((((...........((((((((((((((.((((((......).))))).)))))))))))))))))))).)))))))))))))))))))))))))))..)))).))).))))))))).....

Structure
-----     uu    aua   -    --     auCAUA                      u      aagcuuguucc              c     - ua 
     acuuc  agug   gug guca  auuac      UACUCCCUCCGUCCGAAAaagu uguccc           ucaaauggauguau uagca c  a
     |||||  ||||   ||| ||||  |||||      |||||||||||||||||||||| ||||||           |||||||||||||| ||||| |   
     ugaag  ucac   cau uagu  uaaug      augagggagguaggcuuuuucg acaggg           aguuuacuuacaua aucgu g  c
aucgu     --    --a   a    uu     ------                      c      -----------              c     a uu 


Annotation confidence Low
Do you think this miRNA is real?
Comments
Yao et al. misname this sequence miR517 in [1]. miR1133 is unrelated to mammalian miR-517;

Genome context
2D: 45939207-45939386 [+]

Database links

Mature tae-miR1133

Accession MIMAT0005368
Description Triticum aestivum tae-miR1133 mature miRNA
Sequence 29 - CAUAUACUCCCUCCGUCCGAAA - 50
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17543110
    Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
    Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
    Genome Biol (2007) 8:R96