miRBase entry: cre-MIR1144a

Stem-loop cre-MIR1144a


Accession
MI0006205
Description
Chlamydomonas reinhardtii cre-MIR1144a precursor miRNA
Gene family
MIPF0000432; MIR1144


Sequence

cggcggcguuggacugcuggggugcagcaggcuUGGAACCGGGCACGCAGGAGguggguuuuguggcggcaggnagCAGGCAGCGCGGGGCUGCUGGuggugguggaggaggaugaaguucgccauucaaacaacccuuucugcaccgguccugugcugcccguugccugcaggagcaaaacacacccacuccguguccggcuccaagauugcugaaccccugucgcuggcugcugccg
((((((((((((.(.((.(((((.(((((..((((((.(((((((((.((..((((.(((((((..(.(((((.(((.((((((((((((((...((((.(((.(((((.(..((((........))))..)...)))))))))))))))))))))))))).))).))))).)..))))))).))))..)).))))))))).))))))..))))).))))).)).)))))).)))))))

Structure
       -     a u  u     g     gg      A         C  GA    g       gg g     n   A              GCU    g   u     --a ga    guu 
cggcggc guugg c gc ggggu cagca  cuUGGA CCGGGCACG AG  Ggug guuuugu  c gcagg agC GGCAGCGCGGGGCU   GGug ugg ggagg   g  ugaa   c
||||||| ||||| | || ||||| |||||  |||||| ||||||||| ||  |||| |||||||  | ||||| ||| ||||||||||||||   |||| ||| |||||   |  ||||    
gccgucg cgguc g ug cccca gucgu  gaaccu ggccugugc uc  ccac caaaacg  g cgucc uug ccgucguguccugg   ccac guc uuucc   c  acuu   g
       u     - c  u     a     ua      c         c  ac    a       ag a     g   c              ---    -   -     caa aa    acc 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
The predominant product from this hairpin precursor is named cre-miR1144a.1 here [1].

Genome context
Unknown

Database links

Mature cre-miR1144a.2

Accession MIMAT0005379
Description Chlamydomonas reinhardtii cre-miR1144a.2 mature miRNA
Sequence 34 - UGGAACCGGGCACGCAGGAG - 53
Evidence experimental
cloned [1]

Mature cre-miR1144a.1

Accession MIMAT0005380
Description Chlamydomonas reinhardtii cre-miR1144a.1 mature miRNA
Sequence 77 - CAGGCAGCGCGGGGCUGCUGG - 97
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17538623
    miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
    "Nature (2007) 447:1126-1129