Stem-loop cre-MIR1151a

Accession

MI0006212

Description

Chlamydomonas reinhardtii cre-MIR1151a precursor miRNA

Gene family

MIPF0000415; MIR1151

Sequence

ccggccgcggcagUCCGGGGCUCAUAACCUGUUGacgcgcgcagcccgcgggcagucccugcgggccgcgcggcgcuaACGGGGUGUGGGACCCGGacugacgcggccgg
(((((((((.(((((((((.(((((..(((((((.(((((((.(((((((((.....))))))))).)))).))).)))))))..))))).))))))))).)))))))))

Structure

         g         G     AA       a   -    a         c 
ccggccgcg cagUCCGGG CUCAU  CCUGUUG cgc gcgc gcccgcggg a
||||||||| ||||||||| |||||  ||||||| ||| |||| ||||||||| g
ggccggcgc gucaGGCCC GGGUG  GGGCAau gcg cgcg cgggcgucc u
         a         A     UG       c   g    c         c 

Annotation confidence Not enough data

Genome context

scaffold_10: 1934033-1934142 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cre-MIR1151a

Mature cre-miR1151a-5p

• Accession: MIMAT0005393
• Description: Chlamydomonas reinhardtii cre-miR1151a-5p mature miRNA
• Sequence: 14 - UCCGGGGCUCAUAACCUGUUG - 34
• Evidence: experimental ; cloned [1]

Mature cre-miR1151a-3p

• Accession: MIMAT0005394
• Description: Chlamydomonas reinhardtii cre-miR1151a-3p mature miRNA
• Sequence: 79 - ACGGGGUGUGGGACCCGG - 96
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129