Stem-loop cre-MIR1151b

Accession

MI0006213

Description

Chlamydomonas reinhardtii cre-MIR1151b precursor miRNA

Gene family

MIPF0000415; MIR1151

Sequence

guggugugugccgcucaccggccacggcagUCCGGGGCUCAUAACCUGUUAacgcgcgcagcccgcaggcagucccugcgggccgcgcggugcuaACGGGUUGUGGGACCCGGACugacgcggcuggcaugugacaggccccac
((((.((.((.(((...((((((.((.(((((((((.((((((((((((((.(((((((.(((((((((.....))))))))).)))).))).)))))))))))))).))))))))).)).))))))...))).)).)).))))

Structure

    u  g  c   uca      a  g         G              a   -    a         c 
gugg gu ug cgc   ccggcc cg cagUCCGGG CUCAUAACCUGUUA cgc gcgc gcccgcagg a
|||| || || |||   |||||| || ||||||||| |||||||||||||| ||| |||| ||||||||| g
cacc cg ac gug   ggucgg gc guCAGGCCC GGGUGUUGGGCAau gug cgcg cgggcgucc u
    c  g  a   uac      c  a         A              c   g    c         c 

Annotation confidence Not enough data

Genome context

scaffold_10: 1935781-1935924 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cre-MIR1151b

Mature cre-miR1151b-5p

• Accession: MIMAT0005395
• Description: Chlamydomonas reinhardtii cre-miR1151b-5p mature miRNA
• Sequence: 31 - UCCGGGGCUCAUAACCUGUUA - 51
• Evidence: experimental ; cloned [1]

Mature cre-miR1151b-3p

• Accession: MIMAT0005396
• Description: Chlamydomonas reinhardtii cre-miR1151b-3p mature miRNA
• Sequence: 96 - ACGGGUUGUGGGACCCGGAC - 115
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129