Stem-loop cre-MIR1153

Accession

MI0006215

Description

Chlamydomonas reinhardtii cre-MIR1153 precursor miRNA

Sequence

caaaUGGGCCAUCGUAUUACUAUCAGUGCUGCUAGCAACUACAAGgcgggcaugaaggucgauuugauccgaucgaccuucaugaccgccUUGUAAUUGCCGGUAGCACUGAUUGUAAUGCGAUGGCUCauuug
((((((((((((((((((((.((((((((((((.((((.((((((((((.((((((((((((((......)))))))))))))).)))))))))).)))).)))))))))))).))))))))))))))))))))

Structure

                    U            A    C          g              ug 
caaaUGGGCCAUCGUAUUAC AUCAGUGCUGCU GCAA UACAAGgcgg caugaaggucgauu  a
|||||||||||||||||||| |||||||||||| |||| |||||||||| ||||||||||||||   
guuuaCUCGGUAGCGUAAUG UAGUCACGAUGG CGUU AUGUUccgcc guacuuccagcuag  u
                    U            C    A          a              cc 

Annotation confidence Not enough data

Comments

Molner et al. identify two miR/miR* pairs from the same hairpin precursor [1].

Genome context

scaffold_15: 1291877-1292010 [+]

Mature cre-miR1153-5p.1

• Accession: MIMAT0005398
• Description: Chlamydomonas reinhardtii cre-miR1153-5p.1 mature miRNA
• Sequence: 5 - UGGGCCAUCGUAUUACUAUCAG - 26
• Evidence: experimental ; cloned [1]

Mature cre-miR1153-5p.2

• Accession: MIMAT0005399
• Description: Chlamydomonas reinhardtii cre-miR1153-5p.2 mature miRNA
• Sequence: 25 - AGUGCUGCUAGCAACUACAAG - 45
• Evidence: experimental ; cloned [1]

Mature cre-miR1153-3p.2

• Accession: MIMAT0005400
• Description: Chlamydomonas reinhardtii cre-miR1153-3p.2 mature miRNA
• Sequence: 91 - UUGUAAUUGCCGGUAGCACUGA - 112
• Evidence: experimental ; cloned [1]

Mature cre-miR1153-3p.1

• Accession: MIMAT0005401
• Description: Chlamydomonas reinhardtii cre-miR1153-3p.1 mature miRNA
• Sequence: 111 - GAUUGUAAUGCGAUGGCUC - 129
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129