Stem-loop cre-MIR1158

Accession

MI0006220

Description

Chlamydomonas reinhardtii cre-MIR1158 precursor miRNA

Literature search

1 open access papers mention cre-MIR1158
(1 sentences)

Sequence

ggcgugcgcagcggcggccgccgcggcugaggaagccaugaucgaggcagcgcaggccacauuguaggccugccgcgcggcugugucaccucugaccaggugcgacgggaagccgggcugcuggggcugcugcugaccgccaguagccuccuccacgucuugugcuagcuccgcaagcaccgcguccucuauguccgucaugucggacucggcgucggagccagggcccucggcucgagcaucagucguccgcgcugcugcugagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgacaugacggauauugaggacgcggugcuugcggagcuagcagaggACUUGGAGGAGGCCACUGGCggucagcagcagccccagcagcccagcuucccgucgcaccuggucagcggugcgacagccgcgcggcaagcauacaacguggccugcgcugccuccaucauggcuuccucagccgcggcggccgccggcuucgagagcc
(((...((.(((((((((((((((((((((((((((((((((.(((((((((((((((((.(((((.((.((((((((((((((..((((.((((((((((((((((((((((.((((((((((((((((((((((((((((((.((((((((((.(((((.(((((((((((((((((((((((((((.(((((((((((((((.....(((......))).(((((...))))).((((.(((.((....))))).)))).....................................................))))))))))))))).))))))))))))))))))))))))))).))))).)))))))))).)))))))))))))))))))))))))))))).)))))))))))))))))))))).))))..)))))))))))))).)).))))).))))))))))))))))).)))))))))))))))))))))))))))))).))).))...)))

Structure

   gug  c   -                              c                 a     g  c              gu    u                      c                              a          c     g                           u               ---------------------gacucggcgucggagccagggcccucggcucg    u   u  u 
ggc   cg agc ggcggccgccgcggcugaggaagccaugau gaggcagcgcaggccac uugua gc ugccgcgcggcugu  cacc cugaccaggugcgacgggaagc gggcugcuggggcugcugcugaccgccagu gccuccucca gucuu ugcuagcuccgcaagcaccgcguccuc auguccgucaugucg                                                     agca cag cg c
|||   || ||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||  |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||                                                     |||| ||| ||  
ccg   gc ucg ccgccggcggcgccgacuccuucgguacua cuccgucgcguccggug aacau cg acggcgcgccgaca  gugg gacugguccacgcugcccuucg cccgacgaccccgacgacgacuggCGGUCA CGGAGGAGGU CAgga acgaucgaggcguucguggcgcaggag uauaggcaguacagc                                                     ucgu guc gc c
   aga  u   g                              c                 c     a  a              gc    c                      a                              C          U     g                           u               nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngag    c   -  g 

Annotation confidence Not enough data

Comments

Molner et al. cloned a number of minor products (cloned only once) from the loop end of this hairpin precursor (not shown) [1].

Genome context

Unknown

Mature cre-miR1158

• Accession: MIMAT0005409
• Description: Chlamydomonas reinhardtii cre-miR1158 mature miRNA
• Sequence: 363 - ACUUGGAGGAGGCCACUGGC - 382
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129