Stem-loop cre-MIR1163

Accession

MI0006224

Description

Chlamydomonas reinhardtii cre-MIR1163 precursor miRNA

Sequence

auugacaacgcgcccgagcgccggcgcaccggcaagaacaaggacaaguaugagaugcugccguaccccggcaacacgcucauggaugaggcugaccugaAGGGCAUGCUGCGUGCCAUGGcgcccuucaucgugcgcgcauagggucuuaacugccagguugaagucgcacacgcggaagaccuugcugccaucaggcgcgaugucguacagcagguuggcgggcuucaggucaaagugcauguagccgcgagcguucaggugcuuugaugAAGAGCGCCAUGGCACGCAGCaugcccuucaggucggccucauccauaagcguguugccgggguacggcagcaucucaaacuuguccuuguucuugccggugcgccggcgcucgggcgcguugucaau
(((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((.((((((((.((((......(((.......)))...(((((..(((...(((((..(((.((((.(((....))))))).))).(((((((..(((((.........)))))..))).)))).))))).))))))))))))..)))))))).))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                 a                              c                                           c        -u    gcauagggucuuaacugccagg     gu   aca     aagaccuugcugccaucaggcgcgaugucg    -   gg     ggg 
auugacaacgcgcccgagcgccggcgcaccggcaagaacaaggacaagu ugagaugcugccguaccccggcaacacgcu auggaugaggcugaccugaAGGGCAUGCUGCGUGCCAUGGcgc cuucaucg  gcgc                      uugaa  cgc   cgcgg                              uaca gca  uuggc   c
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||                      |||||  |||   |||||                              |||| |||  |||||   u
uaacuguugcgcgggcucgcggccgcguggccguucuuguuccuguuca acucuacgacggcauggggccguugugcga uaccuacuccggcuggacuucccguaCGACGCACGGUACCGCG GAAguagu  cgug                      gacuu  gcg   gcgcc                              augu cgu  aacug   u
                                                 a                              a                                           A        uu    ----------------------     --   --a     -----------------------------g    a   ga     gac 

Annotation confidence Not enough data

Genome context

scaffold_31: 330020-330419 [+]

Mature cre-miR1163.2

• Accession: MIMAT0005417
• Description: Chlamydomonas reinhardtii cre-miR1163.2 mature miRNA
• Sequence: 101 - AGGGCAUGCUGCGUGCCAUGG - 121
• Evidence: experimental ; cloned [1]

Mature cre-miR1163.1

• Accession: MIMAT0005418
• Description: Chlamydomonas reinhardtii cre-miR1163.1 mature miRNA
• Sequence: 273 - AAGAGCGCCAUGGCACGCAGC - 293
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129