Stem-loop cre-MIR1144b

Accession

MI0006235

Description

Chlamydomonas reinhardtii cre-MIR1144b precursor miRNA

Gene family

MIPF0000432; MIR1144

Literature search

1 open access papers mention cre-MIR1144b
(1 sentences)

Sequence

gugcagcaggcuugguaccgggcacgccggaggUGGGUAGUGUGGCGGCAGGCAGcaggccucgcggggcugcugguggugguggagcaggacgaccggcgcccguccuccuccuccuccaacagcggccccgcgcugccagcugcccgcagcacaaucaccaacccccagcguacccggcuaaacaccgugggcccacagcac
((((.(..((((((((.(((((.((((.((.(((.(((.(..((((.((.((((((.(((..(((((((((((((.(((.((.((((.((((((.........)))))).)))).)).))).)))))))))))))..))).)))))).)).)).))..)))).))).)).)))).)))))......))))..))))..).))))

Structure

    a ca    --    -----a     c    c  a   G   A UG  -  G  A      a   cu             g   u  u    c      acc 
gugc g  ggcu  uggu      ccggg acgc gg ggU GGU G  UG GC GC GGCAGc ggc  cgcggggcugcug ugg gg ggag aggacg   g
|||| |  ||||  ||||      ||||| |||| || ||| ||| |  || || || |||||| |||  ||||||||||||| ||| || |||| ||||||   g
cacg c  ccgg  gcca      ggccc ugcg cc cca cca c  ac cg cg ccgucg ccg  gcgccccggcgac acc cc ccuc uccugc   c
    a ac    gu    caaauc     a    a  c   a   - ua  a  a  c      a   uc             a   u  u    c      ccg 

Annotation confidence Not enough data

Genome context

Unknown

Mature cre-miR1144b

• Accession: MIMAT0005435
• Description: Chlamydomonas reinhardtii cre-miR1144b mature miRNA
• Sequence: 34 - UGGGUAGUGUGGCGGCAGGCAG - 55
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129