miRBase entry: aga-mir-12

Stem-loop aga-mir-12


Accession
MI0006240
Description
Anopheles gambiae aga-mir-12 precursor miRNA
Gene family
MIPF0000181; mir-12

Literature search
2 open access papers mention aga-mir-12
(9 sentences)

Sequence

ccggggUGAGUAUUACAUCAGGUACUGGUguguaauuuaaacgaccaucggacaugggggcugcccaacuccucuucuguccccggucaagcuaucaguacuuguguuauacucucc
....((.((((((.(((.((((((((((((.((.........((((...(((((.(((((..........)))))..)))))..))))..))))))))))))))))).)))))).))

Structure
ccgg  U      U   U            u  aauuuaaac    auc     -u     cugc 
    gg GAGUAU ACA CAGGUACUGGUg gu         gacc   ggaca  ggggg    c
    || |||||| ||| |||||||||||| ||         ||||   |||||  |||||     
    cc cucaua ugu guucaugacuau cg         cugg   ccugu  ucucc    c
----  u      u   -            -  -------aa    -cc     cu     ucaa 


Annotation confidence Not enough data
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Genome context
chr2R: 37888037-37888153 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aga-mir-12
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aga-miR-12

Accession MIMAT0005527
Description Anopheles gambiae aga-miR-12 mature miRNA
Sequence 7 - UGAGUAUUACAUCAGGUACUGGU - 29
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17933784
    Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion
    "Winter F, Edaye S, Huttenhofer A, Brunel C"
    "Nucleic Acids Res (2007) 35:6953-6962