Stem-loop sequence aga-mir-306

Accession

MI0006243 (change log)

Description

Anopheles gambiae miR-306 stem-loop

Literature search

1 open access papers mention aga-mir-306
(13 sentences)

Stem-loop

       a   -uc      ug  u a        ugugug 
5' ucac ugg   agguac  ga g cucucagu      u
   |||| |||   ||||||  || | ||||||||       
3' agug acc   uccaug  cu c gggagucg      a
       -   cca      gu  u c        uagaaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr3R: 5888600-5888675 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-306

• aga-mir-9c: chr3R: 5891167-5891256 [-]
• aga-mir-306: chr3R: 5888600-5888675 [-]
• aga-mir-79: chr3R: 5888298-5888391 [-]
• aga-mir-9b: chr3R: 5887786-5887878 [-]

Database links

• miRBase Tracker:MI0006243

Mature sequence aga-miR-306

• Accession: MIMAT0005530
• Sequence: 9 - ucagguacuggaugacucucag - 30
• Evidence: experimental; cloned [1]

References

1. PMID:17933784 "Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion" Winter F, Edaye S, Huttenhofer A, Brunel C Nucleic Acids Res. 35:6953-6962(2007).