Stem-loop mcmv-mir-m21-1

Accession

MI0006250

Description

Mouse cytomegalovirus mcmv-mir-m21-1 precursor miRNA

Gene family

MIPF0000453; mir-m21-1

Sequence

cccccgcuugaccgaggcccccaucgugcacacgcaguaaacuaccaccgAUAGGGGACACGUUCAAGCCGggg
((((.((((((.((...((((.(((((((....)))............)))).))))...)).)))))).))))

Structure

    c      c  agg    c    ------------   a 
cccc gcuuga cg   cccc aucg            ugc c
|||| |||||| ||   |||| ||||            |||  
gggG CGAACU GC   GGGG UAgc            acg a
    C      U  ACA    A    caccaucaaaug   c 

Annotation confidence Not enough data

Genome context

Unknown

Mature mcmv-miR-m21-1

• Accession: MIMAT0005540
• Description: Mouse cytomegalovirus mcmv-miR-m21-1 mature miRNA
• Sequence: 51 - AUAGGGGACACGUUCAAGCCG - 71
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 17942535
   Mouse cytomegalovirus microRNAs dominate the cellular small RNA profile during lytic infection and show features of posttranscriptional regulation
   "Dolken L, Perot J, Cognat V, Alioua A, John M, Soutschek J, Ruzsics Z, Koszinowski U, Voinnet O, Pfeffer S"
   "J Virol (2007) 81:13771-13782


2. PubMed ID: 17928340
   Discrete clusters of virus-encoded micrornas are associated with complementary strands of the genome and the 7.2-kilobase stable intron in murine cytomegalovirus
   "Buck AH, Santoyo-Lopez J, Robertson KA, Kumar DS, Reczko M, Ghazal P"
   "J Virol (2007) 81:13761-13770