miRBase entry: mcmv-mir-m108-1

Stem-loop mcmv-mir-m108-1


Accession
MI0006262
Description
Mouse cytomegalovirus mcmv-mir-m108-1 precursor miRNA


Sequence

cguUCACGAGCAACCGCCCGAAAUGugggucuuccgccucguuacgcacguguaaguauacggcguacggagcuccguucgUUUCUGACGGUGGCUCGUGUCGag
((..(((((((.((((.(.((((((..((..(((((......(((((.(((((....)))))))))))))))..))...)))))).).)))).))))))).))..

Structure
--  uU       A    C C      -ug  uc     ccucgu     a     a 
  cg  CACGAGC ACCG C GAAAUG   gg  uuccg      uacgc cgugu a
  ||  ||||||| |||| | ||||||   ||  |||||      ||||| |||||  
  GC  GUGCUCG UGGC G CUUUgc   cc  gaggc      augcg gcaua g
ga  -U       G    A U      uug  uc     ------     -     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mcmv-miR-m108-1-5p

Accession MIMAT0005557
Description Mouse cytomegalovirus mcmv-miR-m108-1-5p mature miRNA
Sequence 4 - UCACGAGCAACCGCCCGAAAUG - 25
Evidence experimental
cloned [1]

Mature mcmv-miR-m108-1-3p

Accession MIMAT0005558
Description Mouse cytomegalovirus mcmv-miR-m108-1-3p mature miRNA
Sequence 82 - UUUCUGACGGUGGCUCGUGUCG - 103
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 17942535
    Mouse cytomegalovirus microRNAs dominate the cellular small RNA profile during lytic infection and show features of posttranscriptional regulation
    "Dolken L, Perot J, Cognat V, Alioua A, John M, Soutschek J, Ruzsics Z, Koszinowski U, Voinnet O, Pfeffer S"
    "J Virol (2007) 81:13771-13782

  2. PubMed ID: 17928340
    Discrete clusters of virus-encoded micrornas are associated with complementary strands of the genome and the 7.2-kilobase stable intron in murine cytomegalovirus
    "Buck AH, Santoyo-Lopez J, Robertson KA, Kumar DS, Reczko M, Ghazal P"
    "J Virol (2007) 81:13761-13770