miRBase entry: xtr-mir-146b

Stem-loop xtr-mir-146b


Accession
MI0006265
Description
Xenopus tropicalis xtr-mir-146b precursor miRNA
Gene family
MIPF0000103; mir-146


Sequence

ccaauggcagggcccggcucUGAGAACUGAAUUCCAUGGACUguuccacucacagcacccucaguccacaguguucagugcuccagucuggcugccacua
....(((((..(((.((((..(((.(((((((.(..(((((((..................)))))))..).))))))).))).)))).))))))))...

Structure
ccaa     gg   c    cU   A       U CA       uuccacuc 
    uggca  gcc ggcu  GAG ACUGAAU C  UGGACUg        a
    |||||  ||| ||||  ||| ||||||| |  |||||||         
    accgu  cgg cuga  cuc ugacuug g  accugac        c
-auc     --   u    -c   g       u ac       ucccacga 


Annotation confidence Not enough data
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Genome context
chr1: 8024073-8024172 [+]

Database links

Mature xtr-miR-146b

Accession MIMAT0005563
Description Xenopus tropicalis xtr-miR-146b mature miRNA
Sequence 21 - UGAGAACUGAAUUCCAUGGACU - 42
Evidence not_experimental

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112