Stem-loop sequence mmu-mir-669k

Accession

MI0006279

Symbol

MGI:Mir669k

Description

Mus musculus miR-669k stem-loop

Gene family

MIPF0000316; mir-467

Stem-loop

-----------------ucuuau   -ca  -aaa     ----            aguugu           cuuc 
                       gcc   cc    aaugu    gcauguguguau      gugcauauuca    u
                       |||   ||    |||||    ||||||||||||      |||||||||||     
                       cgg   gg    uuaca    cguacgcacaua      uacguauaagu    c
gaggauugacucuauaucgagac   uaa  auac     caaa            ------           auau 

Deep sequencing

363 reads, 34 experiments

Genome context

• Coordinates (GRCm38): chr2: 10475300-10475426 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-669k

• mmu-mir-466m: chr2: 10466663-10466746 [+]
• mmu-mir-466f-1: chr2: 10466944-10467037 [+]
• mmu-mir-669f: chr2: 10467229-10467349 [+]
• mmu-mir-669e: chr2: 10467495-10467613 [+]
• mmu-mir-669b: chr2: 10467790-10467886 [+]
• mmu-mir-669d: chr2: 10468343-10468463 [+]
• mmu-mir-466f-2: chr2: 10468675-10468768 [+]
• mmu-mir-669l: chr2: 10468971-10469068 [+]
• mmu-mir-669d-2: chr2: 10471644-10471729 [+]
• mmu-mir-466f-3: chr2: 10471953-10472046 [+]
• mmu-mir-297a-2: chr2: 10472254-10472343 [+]
• mmu-mir-466o: chr2: 10472540-10472623 [+]
• mmu-mir-467c: chr2: 10473931-10474027 [+]
• mmu-mir-466b-1: chr2: 10474219-10474300 [+]
• mmu-mir-669a-3: chr2: 10474433-10474541 [+]
• mmu-mir-669k: chr2: 10475300-10475426 [+]
• mmu-mir-467a-1: chr2: 10476346-10476418 [+]
• mmu-mir-466b-8: chr2: 10476628-10476713 [+]
• mmu-mir-669a-1: chr2: 10476853-10476949 [+]
• mmu-mir-669g: chr2: 10477150-10477272 [+]
• mmu-mir-669j: chr2: 10477910-10478030 [+]
• mmu-mir-467a-2: chr2: 10478798-10478880 [+]
• mmu-mir-466e: chr2: 10479088-10479171 [+]
• mmu-mir-669a-4: chr2: 10479315-10479401 [+]
• mmu-mir-467b: chr2: 10481248-10481320 [+]
• mmu-mir-466c-1: chr2: 10481534-10481617 [+]
• mmu-mir-669a-5: chr2: 10481761-10481847 [+]
• mmu-mir-467a-3: chr2: 10483678-10483760 [+]
• mmu-mir-466c-2: chr2: 10483966-10484055 [+]
• mmu-mir-669a-6: chr2: 10484196-10484282 [+]

Database links

• ENTREZGENE: 100316663;Mir669k
• MGI: 3783389;Mir669k

Mature sequence mmu-miR-669k-5p

• Accession: MIMAT0017323
• Previous IDs: mmu-miR-669k*
• Sequence: 19 - ugugcauguguguauaguugugugc - 43
• Deep sequencing: 112 reads, 22 experiments
• Evidence: experimental; Solexa [2]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-669k-5p
  • MIRDB:mmu-miR-669k-5p
  • RNA22-MMU:mmu-miR-669k-5p

Mature sequence mmu-miR-669k-3p

• Accession: MIMAT0005831
• Previous IDs: mmu-miR-669k
• Sequence: 65 - uaugcauauacacgcaugcaa - 85
• Deep sequencing: 144 reads, 26 experiments
• Evidence: experimental; 454 [1], Solexa [2]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-669k-3p
  • MICRORNA.ORG:mmu-miR-669k-3p
  • MIRDB:mmu-miR-669k-3p
  • RNA22-MMU:mmu-miR-669k-3p
  • TARGETSCAN-VERT:mmu-miR-669k

References

1. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).