Stem-loop sequence mmu-mir-669j

Accession MI0006286
Symbol MGI:Mir669j
Description Mus musculus miR-669j stem-loop
Gene family MIPF0000316; mir-467
Stem-loop 
agcaugcgauucaugugauguccacca  a    --       u     guu    a     u  c 
                           ag augu  gcaugug guaua   gugu cauau ca u
                           || ||||  ||||||| |||||   |||| ||||| ||  
                           uc uaca  cguacac cauau   uaua guaua gu u
-----------agcccgguaagcaccc  a    aa       u     acg    a     u  u
Get sequence
Deep sequencing
297 reads, 27 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr2: 10477910-10478030 [+]
sense
OTTMUST00000026263 ; Sfmbt2-001; intron 10
ENSMUST00000041105 ; Sfmbt2-001; intron 10
ENSMUST00000116594 ; Sfmbt2-201; intron 11
Clustered miRNAs
< 10kb from mmu-mir-669j
mmu-mir-669d chr2: 10468343-10468463 [+]
mmu-mir-466f-2 chr2: 10468675-10468768 [+]
mmu-mir-669l chr2: 10468971-10469068 [+]
mmu-mir-669d-2 chr2: 10471644-10471729 [+]
mmu-mir-466f-3 chr2: 10471953-10472046 [+]
mmu-mir-297a-2 chr2: 10472254-10472343 [+]
mmu-mir-466o chr2: 10472540-10472623 [+]
mmu-mir-467c chr2: 10473931-10474027 [+]
mmu-mir-466b-1 chr2: 10474219-10474300 [+]
mmu-mir-669a-3 chr2: 10474433-10474541 [+]
mmu-mir-669k chr2: 10475300-10475426 [+]
mmu-mir-467a-1 chr2: 10476346-10476418 [+]
mmu-mir-466b-8 chr2: 10476628-10476713 [+]
mmu-mir-669a-1 chr2: 10476853-10476949 [+]
mmu-mir-669g chr2: 10477150-10477272 [+]
mmu-mir-669j chr2: 10477910-10478030 [+]
mmu-mir-467a-2 chr2: 10478798-10478880 [+]
mmu-mir-466e chr2: 10479088-10479171 [+]
mmu-mir-669a-4 chr2: 10479315-10479401 [+]
mmu-mir-467b chr2: 10481248-10481320 [+]
mmu-mir-466c-1 chr2: 10481534-10481617 [+]
mmu-mir-669a-5 chr2: 10481761-10481847 [+]
mmu-mir-467a-3 chr2: 10483678-10483760 [+]
mmu-mir-466c-2 chr2: 10483966-10484055 [+]
mmu-mir-669a-6 chr2: 10484196-10484282 [+]
mmu-mir-467a-4 chr2: 10486135-10486217 [+]
mmu-mir-466b-4 chr2: 10486423-10486512 [+]
mmu-mir-669a-7 chr2: 10486653-10486739 [+]
Database links

Mature sequence mmu-miR-669j

Accession MIMAT0005838
Sequence

80 -  

ugcauauacucacaugcaaaca

 - 101

Get sequence
Deep sequencing 93 reads, 17 experiments
Evidence experimental; 454 [1]
Predicted targets

References

1
PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).