Stem-loop sequence mmu-mir-669f

Accession

MI0006287 (change log)

Symbol

MGI:Mir669f

Description

Mus musculus miR-669f stem-loop

Gene family

MIPF0000316; mir-467

Literature search

13 open access papers mention mmu-mir-669f
(25 sentences)

Stem-loop

   -------------------------   a     c     g    gu        c     c        au 
5'                          ugu ugugc ugugu uaua  ugugugug augug augugugu  a
                            ||| ||||| ||||| ||||  |||||||| ||||| ||||||||   
3'                          aca acacg acgca auau  acacacac uacau uacauaua  u
   aguugcucacgguaaggagacacac   a     a     a    gc        a     a        ag 

Deep sequencing

144737 reads, 858 reads per million, 116 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10467229-10467349 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-669f

• mmu-mir-466m: chr2: 10466663-10466746 [+]
• mmu-mir-466f-1: chr2: 10466944-10467037 [+]
• mmu-mir-669f: chr2: 10467229-10467349 [+]
• mmu-mir-669e: chr2: 10467495-10467613 [+]
• mmu-mir-669b: chr2: 10467790-10467886 [+]
• mmu-mir-669d: chr2: 10468343-10468463 [+]
• mmu-mir-466f-2: chr2: 10468675-10468768 [+]
• mmu-mir-669l: chr2: 10468971-10469068 [+]
• mmu-mir-669d-2: chr2: 10471644-10471729 [+]
• mmu-mir-466f-3: chr2: 10471953-10472046 [+]
• mmu-mir-297a-2: chr2: 10472254-10472343 [+]
• mmu-mir-466o: chr2: 10472540-10472623 [+]
• mmu-mir-467c: chr2: 10473931-10474027 [+]
• mmu-mir-466b-1: chr2: 10474219-10474300 [+]
• mmu-mir-669a-3: chr2: 10474433-10474541 [+]
• mmu-mir-669k: chr2: 10475300-10475426 [+]
• mmu-mir-467a-1: chr2: 10476346-10476418 [+]
• mmu-mir-466b-8: chr2: 10476628-10476713 [+]
• mmu-mir-669a-1: chr2: 10476853-10476949 [+]
• mmu-mir-669g: chr2: 10477150-10477272 [+]

Database links

• EntrezGene:Mir669f
• MGI:Mir669f
• RNAcentral:URS000078D701_10090
• miRBase Tracker:MI0006287

Mature sequence mmu-miR-669f-5p

• Accession: MIMAT0017327
• Sequence: 20 - aguugugugugcaugugcaugugu - 43
• Deep sequencing: 125677 reads, 105 experiments
• Evidence: experimental; 454 [2], Illumina [3]
• Database links:
  • RNAcentral:URS00000BC03C_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669f-5p
  • miRDB:mmu-miR-669f-5p

Mature sequence mmu-miR-669f-3p

• Accession: MIMAT0005839
• Previous IDs: mmu-miR-669f
• Sequence: 57 - cauauacauacacacacacguau - 79
• Deep sequencing: 18890 reads, 103 experiments
• Evidence: experimental; 454 [1], Illumina [3]
• Database links:
  • RNAcentral:URS00004C89DD_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669f-3p
  • miRDB:mmu-miR-669f-3p
  • microrna.org:mmu-miR-669f-3p

References

1. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
2. PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).