Stem-loop mmu-mir-1193

Accession

MI0006298

Symbol

MGI: Mir1193

Description

Mus musculus mmu-mir-1193 precursor miRNA mir-1193

Gene
family

RF03279; mir-1193

Literature search

3 open access papers mention mmu-mir-1193
(3 sentences)

Sequence

2906 reads, 39 reads per million, 58 experiments

cugaagggacaaugaugcccacuguucucgggguagcuguguggaUGGUAGACCGGUGACGUACAcuucauuuaugcugUAGGUCACCCGUUUUACUAUCcaccaacacccagaccaucug
.....(((.((....)))))..((.(((..((((.(.((.(((((((((((((.((((((.(((((.........).)))).)))))).).)))))))))))))).)))))))).))....

Structure

cugaagggacaaugaugcccac  u   cg    a c  u            - C      G    - uuc 
                      ug ucu  gggu g ug guggaUGGUAGA C GGUGAC UACA c   a
                      || |||  |||| | || |||||||||||| | |||||| |||| |   u
                      ac aga  ccca c ac cacCUAUCAUUU G CCACUG AUgu g   u
------------------gucu  c   --    - a  -            U C      G    c uau 

Annotation confidence High

Genome context

chr12: 109715671-109715791 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from mmu-mir-1193

Mature mmu-miR-1193-5p

• Accession: MIMAT0017329
• Description: Mus musculus mmu-miR-1193-5p mature miRNA
• Sequence: 46 - UGGUAGACCGGUGACGUACA - 65
• Evidence: experimental ; Illumina [3]

Mature mmu-miR-1193-3p

• Accession: MIMAT0005851
• Description: Mus musculus mmu-miR-1193-3p mature miRNA
• Sequence: 80 - UAGGUCACCCGUUUUACUAUC - 100
• Evidence: experimental ; 454 [1], Illumina [2-3]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


3. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102