Stem-loop sequence mmu-mir-1196

Accession

MI0006304

Symbol

MGI:Mir1196

Description

Mus musculus miR-1196 stem-loop

Stem-loop

ugcugguc     cucac     u      --      -    uc    --uacu   cag  ug 
        uugaa     agaaa cuaccu  gccucu gccu  caag      ggg   ug  c
        |||||     ||||| ||||||  |||||| ||||  ||||      |||   ||   
        aauuu     uuuuu gguggg  uggggg cggg  guuu      ccc   ac  c
-------a     -uuuu     u      ag      u    uc    uuacau   aaa  ca 

Deep sequencing

285 reads, 44 experiments

Genome context

• Coordinates (GRCm38): chr14: 61752220-61752338 [-]
• Overlapping transcripts:

  intergenic

Database links

• ENTREZGENE: 100316771;Mir1196
• MGI: 3783369;Mir1196

Mature sequence mmu-miR-1196-5p

• Accession: MIMAT0005857
• Previous IDs: mmu-miR-1196
• Sequence: 21 - aaaucuaccugccucugccu - 40
• Deep sequencing: 173 reads, 28 experiments
• Evidence: experimental; 454 [1]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-1196-5p
  • MICRORNA.ORG:mmu-miR-1196-5p
  • MIRDB:mmu-miR-1196-5p
  • RNA22-MMU:mmu-miR-1196-5p
  • TARGETSCAN-VERT:mmu-miR-1196

Mature sequence mmu-miR-1196-3p

• Accession: MIMAT0022718
• Sequence: 93 - ggugagggugguuuuuu - 109
• Deep sequencing: 1 reads, 1 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:mmu-miR-1196-3p
  • MIRDB:mmu-miR-1196-3p

References

1. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).