miRBase entry: mmu-mir-1198

Stem-loop mmu-mir-1198


Accession
MI0006306
Symbol
MGI: Mir1198
Description
Mus musculus mmu-mir-1198 precursor miRNA

Literature search
2 open access papers mention mmu-mir-1198
(3 sentences)

Sequence

49559 reads, 117 reads per million, 101 experiments
uuuuuuuucuuuuguuuauuuuguuugugacaguugucuguUAUGUGUUCCUGGCUGGCUUGGuacucauguguagcccAAGCUAGCCUCUAACUCAUGGCagucauccugucucagucuc
........................(((.(((((.((.((((((((.(((...((((((((((((((......)))..)))))))))))...))).)))))))).))..))))).)))....

Structure
uuuuuuuucuuuuguuuauuuugu   u     -u  u        U   CCU           --   uc 
                        uug gacag  ug cuguUAUG GUU   GGCUGGCUUGG  uac  a
                        ||| |||||  || |||||||| |||   |||||||||||  |||   
                        gac cuguc  ac gaCGGUAC CAA   CCGAUCGAAcc  aug  u
--------------------cucu   u     cu  u        U   UCU           cg   ug 


Annotation confidence High
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Genome context
chrX: 7807101-7807221 [+]

Database links

Mature mmu-miR-1198-5p

Accession MIMAT0005859
Description Mus musculus mmu-miR-1198-5p mature miRNA
Sequence 42 - UAUGUGUUCCUGGCUGGCUUGG - 63
Evidence experimental
454 [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-1198-3p

Accession MIMAT0017332
Description Mus musculus mmu-miR-1198-3p mature miRNA
Sequence 80 - AAGCUAGCCUCUAACUCAUGGC - 101
Evidence experimental
Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  3. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102