Stem-loop cpa-MIR162a

Accession

MI0006308

Description

Carica papaya cpa-MIR162a precursor miRNA

Gene family

MIPF0000127; MIR162_1

Literature search

3 open access papers mention cpa-MIR162a
(17 sentences)

Sequence

aggguaaagucacuggaggcagcgguucaucgaucucuuccugggaauuuggugugaaaaaucacagaacaugaaucgaUCGAUAAACCUCUGCAUCCAGcguuacccc
.((((((...(.(((((.((((.((((.(((((((..(((.((.........(((((....)))))...)).)))..))))))).)))).)))).))))).))))))).

Structure

a      agu a     g    c    c       uc   c  ggaauuugg     a 
 ggguaa   c cugga gcag gguu aucgauc  uuc ug         uguga a
 ||||||   | ||||| |||| |||| |||||||  ||| ||         |||||  
 cccauu   g GACCU CGUC CCAA UAGCUag  aag ac         acacu a
c      --- c     A    U    A       cu   u  ------aag     a 

Annotation confidence Not enough data

Comments

cpa-MIR162a was identified within a 2699 bp putative pri-miRNA isolated from a Carica papaya root cDNA library (accession EF512306).

Genome context

Unknown

Mature cpa-miR162a

• Accession: MIMAT0005567
• Description: Carica papaya cpa-miR162a mature miRNA
• Sequence: 80 - UCGAUAAACCUCUGCAUCCAG - 100
• Evidence: experimental ; cloned [1]

References

1. Differentially expressed and new non-protein-coding genes from a Carica papaya root transcriptome survey
   "Porter BW, Aizawa KS, Zhu YJ, Christopher DA"
   Plant Sci. (2008) 174:38-50