miRBase entry: ptr-mir-1226

Stem-loop ptr-mir-1226


Accession
MI0006314
Description
Pan troglodytes ptr-mir-1226 precursor miRNA
Gene family
MIPF0000444; mir-1226


Sequence

gugagggcaugcaggccuggauggggcagcugggaugguccaaaaggguggccUCACCAGCCCUGUGUUCCCUAG
...((((.(((((((.((((.((((((.((((((....))).....))).)))))))))).))))))).))))..

Structure
gug    c       c    a      a   -----   a 
   aggg augcagg cugg uggggc gcu     ggg u
   |||| ||||||| |||| |||||| |||     |||  
   UCCC UGUGUCC GACC ACUccg ugg     ccu g
-GA    U       C    -      g   gaaaa   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3: 48892295-48892369 [+]

Database links

Mature ptr-miR-1226

Accession MIMAT0005578
Description Pan troglodytes ptr-miR-1226 mature miRNA
Sequence 54 - UCACCAGCCCUGUGUUCCCUAG - 75
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17964270
    Mammalian mirtron genes
    "Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC"
    "Mol Cell (2007) 28:328-336