Stem-loop sequence hsa-mir-548f-2

Accession

MI0006375 (change log)

Symbol

HGNC:MIR548F2

Description

Homo sapiens miR-548f-2 stem-loop

Gene family

MIPF0000317; mir-548

Literature search

46 open access papers mention hsa-mir-548f-2
(146 sentences)

Stem-loop

   uaauaac                 ca              au     c 
5'        uauuagguuggugcgaa  uaauugcaguuuuu  cauua u
          |||||||||||||||||  ||||||||||||||  |||||  
3'        auaauccaaccacguuu  auuaaugucaaaaa  guaau u
   ugauuuu                 uc              cg     u 

Deep sequencing

2370 reads, 2.29 reads per million, 131 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr2: 212426263-212426360 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000256597 ; ERBB4-001; intron 20

  OTTHUMT00000336976 ; ERBB4-002; intron 20

  ENST00000342788 ; ERBB4-001; intron 20

  ENST00000436443 ; ERBB4-002; intron 20

  ENST00000402597 ; ERBB4-201; intron 20

Database links

• EntrezGene:MIR548F-2
• EntrezGene:MIR548F2
• HGNC:MIR548F2
• RNAcentral:URS000075E8A1_9606
• miRBase Tracker:MI0006375

Mature sequence hsa-miR-548f-3p

• Accession: MIMAT0005895
• Sequence: 59 - aaaaacuguaauuacuuuu - 77
• Deep sequencing: 9577 reads, 124 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000B7F84_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-548f-3p
  • miRDB:hsa-miR-548f-3p
  • microrna.org:hsa-miR-548f-3p

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).