Stem-loop sequence hsa-mir-548h-4

Accession

MI0006414 (change log)

Symbol

HGNC:MIR548H4

Description

Homo sapiens miR-548h-4 stem-loop

Gene family

MIPF0000317; mir-548

Literature search

43 open access papers mention hsa-mir-548h-4
(147 sentences)

Stem-loop

   --  ---                       c                cuuu   uac 
5'   gc   uauuagguuggugcaaaaguaau gcgguuuuugucauua    aau   u
     ||   ||||||||||||||||||||||| ||||||||||||||||    |||    
3'   cg   auaauccaaccacguuuucauua cgccaaaaacaguaau    uug   u
   au  uuc                       a                uacu   cau 

Deep sequencing

12657 reads, 4.55 reads per million, 154 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr8: 27048853-27048963 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000375939 ; RP11-521M14.1-001; intron 1

  ENST00000521408 ; RP11-521M14.1-001; intron 1

Database links

• EntrezGene:MIR548H-4
• EntrezGene:MIR548H4
• HGNC:MIR548H4
• RNAcentral:URS000075DB60_9606
• miRBase Tracker:MI0006414

Mature sequence hsa-miR-548h-5p

• Accession: MIMAT0005928
• Previous IDs: hsa-miR-548h
• Sequence: 17 - aaaaguaaucgcgguuuuuguc - 38
• Deep sequencing: 29178 reads, 146 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003E16D3_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548h-5p
  • TargetScanVert:hsa-miR-548h-5p
  • miRDB:hsa-miR-548h-5p
  • microrna.org:hsa-miR-548h-5p

Mature sequence hsa-miR-548h-3p

• Accession: MIMAT0022723
• Sequence: 71 - caaaaaccgcaauuacuuuugca - 93
• Deep sequencing: 6202 reads, 128 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000015188E_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548h-3p
  • TargetScanVert:hsa-miR-548h-3p
  • miRDB:hsa-miR-548h-3p

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).