Stem-loop sequence hsa-mir-548i-2

Accession

MI0006422 (change log)

Symbol

HGNC:MIR548I2

Description

Homo sapiens miR-548i-2 stem-loop

Gene family

MIPF0000317; mir-548

Literature search

42 open access papers mention hsa-mir-548i-2
(142 sentences)

Stem-loop

   -u      c  -----    g    -----------caucc      u                   gga           a 
5'   agaugg uc     cgaa uuug                uauuag uuggugcaaaaguaauugc   uuuugccauua a
     |||||| ||     |||| ||||                |||||| |||||||||||||||||||   |||||||||||  
3'   ucuacc ag     gcuu aaac                augauc gaccauguuuuuauuaacg   aaaacgguaau a
   ac      u  ucccu    g    aaucuuccucuuuucu      c                   aua           g 

Deep sequencing

9513 reads, 17.7 reads per million, 147 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr4: 9556168-9556316 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR548I2
• EntrezGene:MIR548I2
• HGNC:MIR548I2
• RNAcentral:URS000075E2FD_9606
• miRBase Tracker:MI0006422

Mature sequence hsa-miR-548i

• Accession: MIMAT0005935
• Sequence: 39 - aaaaguaauugcggauuuugcc - 60
• Deep sequencing: 37421 reads, 148 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004C1D89_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548i
  • TargetScanVert:hsa-miR-548i
  • miRDB:hsa-miR-548i
  • microrna.org:hsa-miR-548i

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).