Stem-loop sequence hsa-mir-548i-4

Accession

MI0006424 (change log)

Symbol

HGNC:MIR548I4

Description

Homo sapiens miR-548i-4 stem-loop

Gene family

MIPF0000317; mir-548

Literature search

42 open access papers mention hsa-mir-548i-4
(146 sentences)

Stem-loop

   --            a    a   c  a       auac 
5'   agguuggugcaa agua uug gg uuuugcc    u
     |||||||||||| |||| ||| || |||||||    u
3'   uccaaccacguu uuau aac cc aaaacgg    u
   ua            a    a   a  a       caau 

Deep sequencing

9771 reads, 16.9 reads per million, 142 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 84225752-84225828 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR548I4
• EntrezGene:MIR548I4
• HGNC:MIR548I4
• RNAcentral:URS000075E823_9606
• miRBase Tracker:MI0006424

Mature sequence hsa-miR-548i

• Accession: MIMAT0005935
• Sequence: 11 - aaaaguaauugcggauuuugcc - 32
• Deep sequencing: 37421 reads, 148 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004C1D89_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548i
  • TargetScanVert:hsa-miR-548i
  • miRDB:hsa-miR-548i
  • microrna.org:hsa-miR-548i

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).