Stem-loop bol-MIR824

Accession

MI0006438

Description

Brassica oleracea bol-MIR824 precursor miRNA

Gene family

MIPF0000442; MIR824

Literature search

5 open access papers mention bol-MIR824
(10 sentences)

Sequence

ccucgaguugucuuucaugucUAGACCAUUUGUGAGAAGGGAuuuuuuguuugcaccguucaccccacuuucaaucuguagugaguauuaaggaaaauagcuuguucaacauaucacacuacucuuuuagaaacaauacuauauuuuagaugcuuuuccagcuugauauacguuguuuuguuauguauaucuguauuaucccggcuaccaaaacguuaagaaauaaggugaacauccuaaaaccugcauccaauuagaaaggucuaggucacagauauuacuuguuaucucuugauuaagcuauuuuauuucuaucagcaugaucagaucauucaggaguuaaguauaaacuaaaauacauuaaguccauucaugacauuucuggaugcugcauacauaauauuuuccuuguuuuuggacuaugccacacuucggacagacauuuugccuaagagaugucaaaccucugucuggaguguuagagguauuucaugauagcuaagaacuugaaucuugcacuacuuagcuacacuagauuacuucauaguaaauaacuuggggagugggggaaggugcugggnuauuauucccuucucaucgauggucuagaugugcgaggugacucucauugagg
((((((((((((((.(((((((((((((((.(((((((((((..........(((((.(((.((((((((((.(((((.(((((((((((((((...(((..((..........))..))).))))).......)))))).)))).)))))(((.....)))..(((((((((.........)))))))))...........(((.........(((.((((((((((.(((.............(((((((....((((.(((..((((..(((((........)))))..((((((.(((..(........)..))).)))))))))).....(((.((((((((........)))).)))).)))......))).))))))))))).............))).)))))))))).)))...)))((((((((((((((((((((......)))))))).......))))))))))))..(((((((((..((.((((((((..................))))))))))..))).))))))...............))))))))))))))))))...........))))))))))).))))))))))))))).)))))))))).....))))

Structure

    -----          u               U           -uuuuuuguuu     g   a          --aaucuguagugaguauuaaggaaaauagcuuguucaacauaucacacuacucuuuuagaaacaauacuauauuuuagaugcuuuuccagcuugauauacguuguuuuguuauguauaucuguauuauccc   uaccaaaac   a          u   cauccuaaaaccu       auua    g   ------------------------------------------ua    acagauauuacuuguuaucucuugauu 
ccuc     gaguugucuu caugucUAGACCAUU GUGAGAAGGGA           gcacc uuc ccccacuuuc                                                                                                                                    ggc         guu agaaauaagg gaa             gcaucca    gaaa guc                                            gguc                           a
||||     |||||||||| ||||||||||||||| |||||||||||           ||||| ||| ||||||||||                                                                                                                                    |||         ||| |||||||||| |||             |||||||    |||| |||                                            ||||                            
ggag     cucaguggag guguagaucugguag uacucuucccu           cgugg aag ggggugaggg                                                                                                                                    ccg         cag uuuuuguucc uuu             cguaggu    cuuu cag                                            cuag                           a
    uuacu          c               c           uauuaungggu     -   -          guucaauaaaugauacuucauuagaucacaucgauucaucacguucuaaguucaagaaucgauaguacuuuauggagauugugaggucugucuccaaacuguagagaauccguuuuacagacaggcuucaca   ------uau   g          u   auaauacauacgu       ----    a   uacuuaccugaauuacauaaaaucaaauaugaauugaggacuua    acuaguacgacuaucuuuauuuuaucg 

Annotation confidence Not enough data

Genome context

Unknown

Mature bol-miR824

• Accession: MIMAT0005597
• Description: Brassica oleracea bol-miR824 mature miRNA
• Sequence: 22 - UAGACCAUUUGUGAGAAGGGA - 42
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 17704216
   MicroRNA-mediated regulation of stomatal development in Arabidopsis
   "Kutter C, Schob H, Stadler M, Meins F Jr, Si-Ammour A"
   "Plant Cell (2007) 19:2417-2429