Stem-loop sequence hsa-mir-664a

Accession

MI0006442 (change log)

Previous IDs

hsa-mir-664

Symbol

HGNC:MIR664A

Description

Homo sapiens miR-664 stem-loop

Gene family

MIPF0000300; mir-664

Literature search

32 open access papers mention hsa-mir-664a
(96 sentences)

Stem-loop

   ---gaa    gaaacu    a    aaa   u         ac 
5'       cauu      ggcu ggga   uga uggauagaa  u
         ||||      |||| ||||   ||| |||||||||  a
3'       guaa      ccga cccu   auu acuuaucuu  u
   aaaaaa    -aacau    c    ---   u         au 

Deep sequencing

67538 reads, 64.1 reads per million, 156 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

This miRNA sequence overlaps an annotated snoRNA, ACA38b. However, both miR and miR* sequences are identified in reference [1], and the sequence is homologous with rat mir-664.

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr1: 220200538-220200619 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000472438 ; EPRS-006; intron 5

  OTTHUMT00000091133 ; EPRS-001; intron 6

  OTTHUMT00000472508 ; EPRS-007; intron 6

  ENST00000477030 ; EPRS-006; intron 5

  ENST00000366923 ; EPRS-001; intron 6

  ENST00000609181 ; EPRS-007; intron 6

Database links

• EntrezGene:MIR664
• HGNC:MIR664A
• RNAcentral:URS000075B7FD_9606
• miRBase Tracker:MI0006442

Mature sequence hsa-miR-664a-5p

• Accession: MIMAT0005948
• Previous IDs: hsa-miR-664*;hsa-miR-664-5p
• Sequence: 11 - acuggcuagggaaaaugauuggau - 34
• Deep sequencing: 28229 reads, 148 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000259AE4_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-664a-5p
  • miRDB:hsa-miR-664a-5p
  • microrna.org:hsa-miR-664a-5p

Mature sequence hsa-miR-664a-3p

• Accession: MIMAT0005949
• Previous IDs: hsa-miR-664;hsa-miR-664-3p
• Sequence: 49 - uauucauuuauccccagccuaca - 71
• Deep sequencing: 39183 reads, 152 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000029AE45_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-664a-3p
  • miRDB:hsa-miR-664a-3p
  • microrna.org:hsa-miR-664a-3p

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).