miRBase entry: bna-MIR390a

Stem-loop bna-MIR390a


Accession
MI0006447
Description
Brassica napus bna-MIR390a precursor miRNA
Gene family
MIPF0000101; MIR390

Literature search
7 open access papers mention bna-MIR390a
(9 sentences)

Sequence

auuucaggugauguaguugagaaguagcuguaAAGCUCAGGAGGGAUAGCGCCaugucucaccgguacuauaaaauguuuguauaucuauauuggcgcuauccauccugaguucuauggcuucuucuugcuuuuauccugagau
((((((((......(((.((((((.(((((((.(((((((((.(((((((((((..........((((............))))........))))))))))).))))))))).))))))).))))))))).....))))))))

Structure
        ugaugu   u      u       A         G           ugucucaccg    uauaa 
auuucagg      agu gagaag agcugua AGCUCAGGA GGAUAGCGCCa          guac     a
||||||||      ||| |||||| ||||||| ||||||||| |||||||||||          ||||      
uagagucc      ucg uucuuc ucgguau uugaguccu ccuaucgcggu          uaug     a
        -uauuu   -      u       c         a           --uauaucua    uuugu 


Annotation confidence Not enough data
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Genome context
EM:DU830650: 512-655 [-]

Database links

Mature bna-miR390a

Accession MIMAT0005602
Description Brassica napus bna-miR390a mature miRNA
Sequence 33 - AAGCUCAGGAGGGAUAGCGCC - 53
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17659282
    Cloning and characterization of microRNAs from Brassica napus
    "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
    "FEBS Lett (2007) 581:3848-3856