Stem-loop bna-MIR390b

Accession

MI0006448

Description

Brassica napus bna-MIR390b precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

7 open access papers mention bna-MIR390b
(9 sentences)

Sequence

guagagaagaaucuguaAAGCUCAGGAGGGAUAGCGCCaucaugaucacacacaucgauauuuuuggcgcuguccauccugaguuucauuggcucuucuuacuac
((((((((((.((.((.((((((((((.(((((((((((..(..(((.........)))..)..))))))))))).)))))))))).)).)).))))))..))))

Structure

    --      a  u  a          G           uc ug   aca 
guag  agaaga uc gu AAGCUCAGGA GGAUAGCGCCa  a  auc   c
||||  |||||| || || |||||||||| |||||||||||  |  |||   a
cauc  ucuucu gg ua uuugaguccu ccugucgcggu  u  uag   c
    au      c  u  c          a           uu ua   cua 

Annotation confidence Not enough data

Genome context

EM:AC189543: 93838-93942 [+]

Mature bna-miR390b

• Accession: MIMAT0005603
• Description: Brassica napus bna-miR390b mature miRNA
• Sequence: 18 - AAGCUCAGGAGGGAUAGCGCC - 38
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823