Stem-loop bna-MIR171b

Accession

MI0006451

Description

Brassica napus bna-MIR171b precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

5 open access papers mention bna-MIR171b
(14 sentences)

Sequence

gguaacgcgagauauuagugcgguucaaucaaauagucguguucucacuugauagagaucgguuuuguucgaUUGAGCCGUGCCAAUAUCACGcgucaacc
(((.(((((.((((((.(((((((((((((.(((((...((.((((........)))).))...))))).))))))))))))).)))))).)))))..)))

Structure

   -a     a      a             a     ucg  u    acu 
ggu  acgcg gauauu gugcgguucaauc aauag   ug ucuc   u
|||  ||||| |||||| ||||||||||||| |||||   || ||||    
cca  ugcGC CUAUAA CGUGCCGAGUUag uuguu   gc agag   g
   ac     A      C             c     uug  u    aua 

Annotation confidence Not enough data

Genome context

EM:DX044654: 119-219 [+]

Mature bna-miR171b

• Accession: MIMAT0005606
• Description: Brassica napus bna-miR171b mature miRNA
• Sequence: 73 - UUGAGCCGUGCCAAUAUCACG - 93
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823