miRBase entry: bna-MIR169h

Stem-loop bna-MIR169h


Accession
MI0006464
Description
Brassica napus bna-MIR169h precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
11 open access papers mention bna-MIR169h
(43 sentences)

Sequence

gagaaauggugacaugaagaaugagaaguuguguggUAGCCAAGGAUGACUUGCCUGCgucuuagaccauaucuaucaaagacuaaaagauugauagucuucgaugaauugguuaaucgguaggcagucuccucggcuauucagacaguucucuuucuccucauuucacauuucuc
((((((((.(((.((((((((.(((((.((((.((((((((.((((.((((.((((((......(((((..((.(((.(((((((.........))))))).)))))..))))).....)))))))))))))).))))).))).))))))))).))))..)))).)))))))))))

Structure
        g   c    --    u     g    g   -     A    U    U      gucuua     ua  u   a       aaa 
gagaaaug uga auga  agaa gagaa uugu ugg UAGCC AGGA GACU GCCUGC      gacca  uc auc aagacua   g
|||||||| ||| ||||  |||| ||||| |||| ||| ||||| |||| |||| ||||||      |||||  || ||| |||||||   a
cucuuuac acu uacu  ucuu cucuu gaca acu aucgg uccu cuga cggaug      uuggu  ag uag uucugau   u
        -   u    cc    u     -    g   u     c    -    -      -gcuaa     ua  -   c       agu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
EM:BZ062541: 101-276 [+]

Database links

Mature bna-miR169h

Accession MIMAT0005619
Description Brassica napus bna-miR169h mature miRNA
Sequence 37 - UAGCCAAGGAUGACUUGCCUGC - 58
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17659282
    Cloning and characterization of microRNAs from Brassica napus
    "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
    "FEBS Lett (2007) 581:3848-3856