Stem-loop bna-MIR169k

Accession

MI0006467

Description

Brassica napus bna-MIR169k precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

11 open access papers mention bna-MIR169k
(42 sentences)

Sequence

aaacggugacaugaagaaugagaaguuguguggUAGCCAAGGAUGACUUGCCUGCgucuuaacaccauaucacagacuuuaucgauagucucugaguugguuaggcuguaggcagucuccucggcuauucagacacuccucuuucuccucauuuc
.......((.((((((((.(((.(((.((.((((((((.((((.((((.(((((((.((((..((((..(((.(((((........))))).)))..)))))))).))))))))))))))).))))).))).))))).))).))))..)))).))

Structure

aaacggu  c    --    u   a   u  g   -     A    U    U       u    ac    ua   c     uua 
       ga auga  agaa gag agu gu ugg UAGCC AGGA GACU GCCUGCg cuua  acca  uca agacu   u
       || ||||  |||| ||| ||| || ||| ||||| |||| |||| ||||||| ||||  ||||  ||| |||||    
       cu uacu  ucuu cuc uca ca acu aucgg uccu cuga cggaugu ggau  uggu  agu ucuga   c
-------  u    cc    u   c   -  g   u     c    -    -       c    --    ug   c     uag 

Annotation confidence Not enough data

Genome context

EM:AC189356: 6626-6780 [-]

Mature bna-miR169k

• Accession: MIMAT0005622
• Description: Brassica napus bna-miR169k mature miRNA
• Sequence: 34 - UAGCCAAGGAUGACUUGCCUGC - 55
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823