Stem-loop bna-MIR168a

Accession

MI0006470

Description

Brassica napus bna-MIR168a precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

8 open access papers mention bna-MIR168a
(20 sentences)

Sequence

uuacggcggccucugacUCGCUUGGUGCAGGUCGGGAAcugauuggcugacaccgccacguggcuuuccaugguuggcuugugagcagggaucggaucccgccuuguaucaagugaauccgaguccgacguga
(((((.(((.(((.((.((((((((((((((.(((((.((((((.(((.(((..(((((((((....)))))..)))).))).)))...)))))).))))).)))))))))))))).)).))).))).)))))

Structure

     g   c   u  c              U     A      --g   g   cc    --     c 
uuacg cgg cuc ga UCGCUUGGUGCAGG CGGGA cugauu   gcu aca  gcca  cgugg u
||||| ||| ||| || |||||||||||||| ||||| ||||||   ||| |||  ||||  |||||  
agugc gcc gag cu agugaacuauguuc gcccu ggcuag   cga ugu  cggu  guacc u
     a   u   c  a              c     a      gga   g   -u    ug     u 

Annotation confidence Not enough data

Genome context

EM:AC189658: 41467-41599 [-]

Mature bna-miR168a

• Accession: MIMAT0005625
• Description: Brassica napus bna-miR168a mature miRNA
• Sequence: 18 - UCGCUUGGUGCAGGUCGGGAA - 38
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823