Stem-loop bna-MIR166d

Accession

MI0006477

Description

Brassica napus bna-MIR166d precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

9 open access papers mention bna-MIR166d
(31 sentences)

Sequence

guggugcgguuuagggcugagaggacuguugucuggcucgaggucaugaagaaugaaaccuaaaccuaaaugauucUCGGACCAGGCUUCAUUCCCCccagccguuuuaucgccauauauaugcccac
((((((......(.(((((.(.(((.((..((((((.((((((((((..((..............))..)))).)))))).))))))..)).))).).))))).).....))))))............

Structure

------------      cgguuu g     a a   c  uu      c      -    ga  aaugaa 
            guggug      a ggcug g gga ug  gucugg ucgagg ucau  ag      a
            ||||||      | ||||| | ||| ||  |||||| |||||| ||||  ||       
            uaccgc      u ccgac C CCU AC  CGGACC GGCUcu agua  uc      c
cacccguauaua      -uauuu g     c C   U  UU      A      u    aa  caaauc 

Annotation confidence Not enough data

Genome context

EM:AC189313: 1397-1524 [+]

Mature bna-miR166d

• Accession: MIMAT0005632
• Description: Brassica napus bna-miR166d mature miRNA
• Sequence: 77 - UCGGACCAGGCUUCAUUCCCC - 97
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823