Stem-loop bna-MIR159

Accession

MI0006480

Description

Brassica napus bna-MIR159 precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

9 open access papers mention bna-MIR159
(51 sentences)

Sequence

guagggcuccuuauaguucaaacgagaguuuagcaggguaaagaaaagcugcuaagcuaugaaucccauaagcccuaauccuuauauauaaaaaggauuugguuauauggcuuacauaucucaggagcuuuaacuugcccuuuaauugcuuuuacucuucUUUGGAUUGAAGGGAGCUCUAca
((((((((((((.(((((((((.((((((..((((((((((...((((((.((.((.((((.(..(((((((((..(((((((.........))))))).)))).)))))..).)))).)).)).))))))...))))))......))))...)))))).))))))))).)))))))))))).

Structure

-            a         c      -uu    ------      aga      g  a  c    a uc     -    cu       aua 
 guagggcuccuu uaguucaaa gagagu   agca      ggguaa   aaagcu cu ag uaug a  ccaua agcc  aauccuu   u
 |||||||||||| ||||||||| ||||||   ||||      ||||||   |||||| || || |||| |  ||||| ||||  |||||||   a
 cAUCUCGAGGGA GUUAGGUUU uucuca   ucgu      cccguu   uuucga ga uc auac u  gguau uugg  uuaggaa   u
a            A         c      uuu    uaauuu      caa      g  c  u    a uc     a    -u       aaa 

Annotation confidence Not enough data

Genome context

EM:AC189598: 83537-83719 [-]

Mature bna-miR159

• Accession: MIMAT0005635
• Description: Brassica napus bna-miR159 mature miRNA
• Sequence: 161 - UUUGGAUUGAAGGGAGCUCUA - 181
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823