Stem-loop bna-MIR156b

Accession

MI0006481

Description

Brassica napus bna-MIR156b precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

13 open access papers mention bna-MIR156b
(291 sentences)

Sequence

uagguuugagagugaugcugguugUUGACAGAAGAUAGAGAGCACuaaggaugacaugcaaguacauauguauguaucaucacaccgccuguggaugauuacaaaaauaaaaccaauucaaaagagagagagagagagccugcaugucuacucuuucgugcucucuauacuucugucaccaccauuauuucuucuucuuucuuaccua
(((((..((((((((((.((((....(((((((((((((((((((.(((((.((((((((.((.........(((((((((.(((.....)))))))).))))..............((......))..........)).))))))))...))))).))))))))))).)))))))))))).))))).........)))))..)))))

Structure

     uu     ---------     c    ugUU        -           u     --u        a  -------------------------acauaugua    -     a   c 
uaggu  gagag         ugaug uggu    GACAGAAG AUAGAGAGCAC aagga   gacaugca gu                                  ugua ucauc cac g
|||||  |||||         ||||| ||||    |||||||| ||||||||||| |||||   |||||||| ||                                  |||| ||||| ||| c
aucca  cuuuc         auuac acca    cugucuuc uaucucucgug uuucu   cuguacgu cg                                  acau aguag gug c
     uu     uucuucuuu     c    ----        a           c     cau        c  agagagagagagagaaaacuuaaccaaaauaaaa    u     -   u 

Annotation confidence Not enough data

Genome context

EM:AC189250: 143274-143481 [-]

Mature bna-miR156b

• Accession: MIMAT0005636
• Description: Brassica napus bna-miR156b mature miRNA
• Sequence: 25 - UUGACAGAAGAUAGAGAGCAC - 45
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856