Stem-loop bna-MIR1140

Accession

MI0006482

Description

Brassica napus bna-MIR1140 precursor miRNA

Gene family

MIPF0001568; MIR1140

Literature search

4 open access papers mention bna-MIR1140
(7 sentences)

Sequence

cucaaucuuuuauauggcuccgauuggcuuuaggcuguuguggcuuugacuucuuucuaaagucuucaaaauuuaguuuuucacaaucacguuaaauuuuuuuaaaagucacagccacaACAGCCUAAACCAAUCGGAGCcauggugaug
....(((.....(((((((((((((((.(((((((((((((((((.((((((....(((((..........)))))...............(((((....))))))))))).))))))))))))))))))))))))))))))))..))).

Structure

cuca   uuuua               c                 u      -------------------------cuuu     gucu 
    auc     uauggcuccgauugg uuuaggcuguuguggcu ugacuu                             cuaaa    u
    |||     ||||||||||||||| ||||||||||||||||| ||||||                             |||||     
    uag     guacCGAGGCUAACC AAAUCCGACAacaccga acugaa                             gauuu    c
---g   ---ug               -                 c      aauuuuuuuaaauugcacuaacacuuuuu     aaaa 

Annotation confidence Not enough data

Genome context

EM:AC189528: 128989-129138 [+]

Mature bna-miR1140

• Accession: MIMAT0005637
• Description: Brassica napus bna-miR1140 mature miRNA
• Sequence: 120 - ACAGCCUAAACCAAUCGGAGC - 140
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823