Stem-loop vvi-MIR156d

Accession

MI0006488

Description

Vitis vinifera vvi-MIR156d precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

12 open access papers mention vvi-MIR156d
(96 sentences)

Sequence

398445 reads, 26724 reads per million, 2 experiments

agagagagacUGACAGAAGAGAGUGAGCACaugcaggcaauuuguauaaggguauaccuaugccggugcgugcucaccucucuuucugucagcuucaggugcu
.....(((.(((((((((((((((((((((.(((.((((....(((((....)))))...)))).))).))))))).))))).))))))))).))).......

Structure

--agaga   a         -     -       a   a    auuu     a 
       gag cUGACAGAA GAGAG UGAGCAC ugc ggca    guaua g
       ||| ||||||||| ||||| ||||||| ||| ||||    |||||  
       cuu gacugucuu cucuc acucgug gug ccgu    cauau g
ucgugga   c         u     c       c   g    -auc     g 

Annotation confidence Not enough data

Genome context

chr11: 7623217-7623319 [-]

Mature vvi-miR156d

• Accession: MIMAT0005643
• Description: Vitis vinifera vvi-miR156d mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558