Stem-loop vvi-MIR164a

Accession

MI0006503

Description

Vitis vinifera vvi-MIR164a precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

6 open access papers mention vvi-MIR164a
(32 sentences)

Sequence

102055 reads, 6785 reads per million, 2 experiments

agcuccuuguUGGAGAAGCAGGGCACGUGCAgauuugccucacuuuucccccuuuuuucuucuuuacucccaccaccgcccacaggcuugcacgugcuccccuucuccaacauggguuccu
.((.((.(((((((((((..((((((((((((....((((...........................................))))))))))))))))..))))))))))).))))....

Structure

---a  u  u           CA            auuu    cacuuuucccccuuuuuucu 
    gc cc uguUGGAGAAG  GGGCACGUGCAg    gccu                    u
    || || |||||||||||  ||||||||||||    ||||                    c
    ug gg acaaccucuuc  cucgugcacguu    cgga                    u
uccu  -  u           cc            ----    cacccgccaccacccucauu 

Annotation confidence Not enough data

Genome context

chr7: 3287470-3287590 [-]

Mature vvi-miR164a

• Accession: MIMAT0005658
• Description: Vitis vinifera vvi-miR164a mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558