Stem-loop vvi-MIR166d

Accession

MI0006510

Description

Vitis vinifera vvi-MIR166d precursor miRNA

Literature search

8 open access papers mention vvi-MIR166d
(14 sentences)

Sequence

329567349 reads, 1015893.0 reads per million, 226 experiments

cugcuuugagggGAUUGUUGUCUGGCUCGAGGCcaccaaccaucuuugauugauucaaauacuuugaucagcuucaacccaucuucuccuucaauucaauuccacccucugauuauguguuagugcccUCGGACCAGGCUUCAUUCCCCucaaucacugc
.....(((((((((.((..((((((.((((((.(((.((((((.(((((.....)))))......((((((.....................................))))))))).))).))).)))))).))))))..)).))))))))).......

Structure

--cugcu         U  UU      C      C   c   -   cuuugauugauucaaauacuuu      cuucaacccaucuucuc 
       uugagggGA UG  GUCUGG UCGAGG cac aac cau                      gaucag                 c
       ||||||||| ||  |||||| |||||| ||| ||| |||                      ||||||                 u
       aacuCCCCU AC  CGGACC GGCUcc gug uug gua                      uuaguc                 u
cgucacu         U  UU      A      c   a   u   ----------------------      ucccaccuuaacuuaac 

Annotation confidence High

Genome context

gb|CP126663.1|: 26947435-26947594 [-]

Mature vvi-miR166d-5p

• Accession: MIMAT0061475
• Description: Vitis vinifera vvi-miR166d-5p mature miRNA
• Sequence: 13 - GAUUGUUGUCUGGCUCGAGGC - 33
• Evidence: experimental ; unknown

Mature vvi-miR166d-3p

• Accession: MIMAT0005665
• Description: Vitis vinifera vvi-miR166d-3p mature miRNA
• Sequence: 129 - UCGGACCAGGCUUCAUUCCCC - 149
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558